Publications

Briley, P.M., Webster, L., Lankappa, S., Pszczolkowski, S., McAllister-Williams, H., Liddle, P.F., Auer, D.P., and Morriss, R., 2024. "Trajectories of improvement with repetitive transcranial magnetic stimulation for treatment-resistant major depression in the BRIGhTMIND trial" npj Mental Health Research, 3 (32) [Link]

Assimopoulos, S., Warrington, S., Bryant, K.L., Pszczolkowski, S., Jbabdi, S., Mars, R.B. and Sotiropoulos, S.N., 2024. "Generalising XTRACT tractography protocols across common macaque brain templates" Brain Structure and Function, pp.1-16. [Link]

Morriss, R., Briley, P.M., Webster, L., Abdelghani, M., Barber, S., Bates, Brookes, C., Hall, B., Ingram, L., Kurkar, M., C., Lankappa, S., Liddle, P., McAllister-Williams, H., O'Neil-Kerr, A., Pszczolkowski, S., Suazo Di Paola, A., Walters, Y., and Auer, D.P., 2024. "Connectivity-guided intermittent theta burst versus repetitive transcranial magnetic stimulation for treatment-resistant depression: a randomized controlled trial" Nature Medicine, 30, pp.403-413 [Link]

Drabek, M., Hodkinson, D., Horvath, S., Millar, B., Pszczolkowski Parraguez, S., Tench, C.R., Tanasescu, R., Lankappa, S., Morriss, R., Walsh, D. and Auer, D.P., 2023. "Brain connectivity-guided, optimised theta burst transcranial magnetic stimulation to improve central pain modulation in knee osteoarthritis pain (BoostCPM): Protocol of a pilot randomised clinical trial in a secondary care setting in the UK" BMJ open, 13(10), p.e073378 [Link]

Kok, Y.E., Pszczolkowski, S., Law, Z.K., Ali, A., Krishnan, K., Bath, P.M., Sprigg, N., Dineen, R.A. and French, A.P., 2022. "Semantic segmentation of spontaneous intracerebral hemorrhage, intraventricular hemorrhage, and associated edema on CT images using deep learning" Radiology: Artificial Intelligence, 4(6), e220096 [Link]

Pszczolkowski, S., Sprigg, N., Woodhouse, L.J., Gallagher, R., Swienton, D., Law, Z.K., Casado, A.M., Roberts, I., Werring, D.J., Salman, R.A.S., England, T., Morgan, P.S., Bath, P.M. and Dineen, R.A., 2022. "Effect of Tranexamic Acid Administration on Remote Cerebral Ischemic Lesions in Acute Spontaneous Intracerebral Hemorrhage: A Substudy of a Randomized Clinical Trial." JAMA Neurology, 79(5), pp.468-477 [Link]

Pszczolkowski, S., Cottam, W.J., Briley, P.M., Iwabuchi, S.J., Kaylor-Hughes, C., Shalabi, A., Babourina-Brooks, B., Berrington, A., Barber, S., Suazo Di Paola, A., Blamire, A., McAllister-Williams, R.H., Parikh, J., Matthäus, L., Hauffe, R., Liddle, P., Auer, D.P., Morriss, R., 2022. "Connectivity Guided Theta Burst Transcranial Magnetic Stimulation Versus Repetitive Transcranial Magnetic Stimulation for Treatment Resistant Moderate to Severe Depression: Magnetic Resonance Imaging Protocol and SARS COVID-19 induced changes for a Randomized Double-blind Controlled Trial (BRIGhTMIND)" JMIR Research Protocols, 11(1), e31925 [Link]

Pszczolkowski, S., Manzano-Patrón, J.P., Law, Z.K., Krishnan, K., Ali, A., Bath, P.M., Sprigg, N. and Dineen, R.A., 2021. "Quantitative CT radiomics-based models for prediction of haematoma expansion and poor functional outcome in primary intracerebral haemorrhage" European Radiology, 31, pp.7945–7959 [Link]

Dineen, R.A., Blanchard, C.V., Pszczolkowski, S., Paine, S., Prasad, M., Chow, G., Whitehouse, W.P., Auer, D.P., 2021. "Accumulation of brain hypointense foci on susceptibility-weighted imaging in childhood ataxia telangiectasia" American Journal of Neuroradiology, 42(6), pp.1144-1150 [Link]

Morriss, R., Webster, L., Abdelghani, M., Auer, D.P., Barber, S., Bates, P., Blamire, A., Briley, P.M., Brookes, C., Iwabuchi, S., James, M., Kaylor-Hughes, C., Lankappa, S., Liddle, P., McAllister-Williams, H., O'Neil-Kerr, A., Pszczolkowski, S., Suazo Di Paola, A., Thomson, L. and Walters, Y., 2020. "Connectivity guided theta burst transcranial magnetic stimulation versus repetitive transcranial magnetic stimulation for treatment-resistant moderate to severe depression: study protocol for a randomised double-blind controlled trial (BRIGhTMIND)" BMJ open, 10(7), p.e038430 [Link]

Veloz, A., Weinstein, A., Pszczolkowski, S., Hernández-García, L., Olivares, R., Muñoz, R., Taramasco, C., 2019. "Ant colony clustering for ROI identification in functional magnetic resonance imaging" Computational Intelligence and Neuroscience, 5259643 [Link]

Dineen, R.A., Raschke, F., McGlashan, H.L., Pszczolkowski, S., Hack, L., Cooper, A.D., Prasad, M., Chow, G., Whitehouse, W.P., Auer, D.P., 2020. "Multiparametric cerebellar imaging and clinical phenotype in childhood ataxia telangiectasia" NeuroImage: Clinical, 25, 102110 [Link]

Law, Z.K., Ali, A., Krishnan, K., Bischoff, A., Appleton, J.P., Scutt, P., Woodhouse, L., Pszczolkowski, S., Cala, L.A., Dineen, R.A., England, T.J., Ozturk, S., Roffe, C., Bereczki, D., Ciccone, A., Christensen, H., Ovesen, C., Bath, P.M., and Sprigg, N., 2020. "Noncontrast Computed Tomography signs as predictors of hematoma expansion, clinical outcome, and response to tranexamic acid in acute intracerebral hemorrhage" Stroke, 51, pp.121-128 [Link]

Pszczolkowski, S., Law, Z.K., Gallagher, R.G., Meng, D., Swienton, D.J., Morgan, P.S., Bath, P.M., Sprigg, N. and Dineen, R.A., 2019. "Automated segmentation of haematoma and perihaematoma oedema in MRI of acute spontaneous intracerebral haemorrhage" Computers in Biology and Medicine, 106, pp.126-139 [Link]

Dineen, R.A., Pszczolkowski, S., Flaherty, K., Law, Z.K., Morgan, P.S., Roberts, I., Werring, D.J., Salman, R.A.S., England, T., Bath, P.M. and Sprigg, N., 2018. "Does tranexamic acid lead to changes in MRI measures of brain tissue health in patients with spontaneous intracerebral haemorrhage? Protocol for a MRI substudy nested within the double-blind randomised controlled TICH-2 trial." BMJ open, 8(2), p.e019930 [Link]

Snape, P., Pszczolkowski, S., Zafeiriou, S., Tzimiropoulos, G., Ledig, C. and Rueckert, D., 2016. "A robust similarity measure for volumetric image registration with outliers" Image and Vision Computing, 52, pp.97-113 [Link]

Caro, L., Correa, J., Espinace, P., Langdon, D., Maturana, D., Mitnik, R., Montabone, S., Pszczolkowski, S., Araneda, A., Mery, D., Torres, M. and Soto, A. 2012. "Indoor Mobile Robotics at Grima, PUC" Journal of Intelligent & Robotic Systems, 66(1-2), pp.151-165 [Link]

Peake, E.J., Chevasson, R., Pszczolkowski, S., Auer, D.P., Arthofer, C., 2020. "Ensemble learning for robust knee cartilage segmentation: data from the osteoarthritis initiative" bioRxiv [Link]

Pszczolkowski, S., Law, Z.K., 2023. "Editorial comment on ‘Development and validation of a novel radiomics‑clinical model for predicting post-stroke epilepsy after first-ever intracerebral haemorrhage’" European Radiology [Link]

Pszczolkowski, S., Hayat, T.T.A., Xing, Y., Evans, J., Morgan, P.S., Auer, D.P. and Tench, C., 2023, November. "A synthetic normative template for Parkinson’s disease studies using structural and neuromelanin-sensitive magnetic resonance imaging" In 18th International Symposium on Medical Information Processing and Analysis (SIPAIM) (Proc. SPIE 12567, 125670K) [Link] (Oral talk)

Pszczolkowski, S., Zafeiriou, S., Ledig, C. and Rueckert, D., 2014, April. "A robust similarity measure for nonrigid image registration with outliers" In 11th International Symposium on Biomedical Imaging (ISBI) (pp. 568-571). IEEE [Link] (Oral talk)

Pszczolkowski, S., Pizarro, L., O’Regan, D.P. and Rueckert, D., 2012, October. "Gradient projection learning for parametric nonrigid registration" In International Workshop on Machine Learning in Medical Imaging (pp. 226-233). Springer, Berlin, Heidelberg [Link] (Poster)

Pszczolkowski, S., Pizarro, L., Guerrero, R. and Rueckert, D., 2012, February. "Nonrigid free-form registration using landmark-based statistical deformation models" In Medical Imaging 2012: Image Processing (Vol. 8314, p. 831418). International Society for Optics and Photonics [Link] (Oral talk)

Pszczolkowski, S. and Soto, A., 2007, November. "Human detection in indoor environments using multiple visual cues and a mobile robot" In Iberoamerican Congress on Pattern Recognition (pp. 350-359). Springer, Berlin, Heidelberg [Link] (Oral talk)

Assimopoulos, S., Warrington, S., Pszczolkowski, S., Bryant, K.L., Mars, R. and Sotiropoulos, S., 2023, July. "Generalising XTRACT tractography protocols across common macaque brain templates" In OHBM 2023 (Poster)

Pszczolkowski, S., Blanchard, C., Whitehouse, W., Auer, D.P. and Dineen, R.A., 2023, July. "Brain perfusion and diffusion patterns in childhood Ataxia Telangiectasia" In OHBM 2023 (Poster)

Hayat, T., Pszczolkowski, S., Xing, Y., Tench, C., Morgan, P., Evans, J. and Auer, D., 2022, September. "Optimization of a neuromelanin MRI protocol for use in a longitudinal study of substantia nigra depigmentation in early Parkinson’s Disease (the InsIght-PD study)" In MOVEMENT DISORDERS (Vol. 37, pp. S74-S75) (Poster)

Peake, E., Zedan, Y., Pszczolkowski, S., Kerslake, R., Scammell, B., and Auer, D., 2018, November. "Method for co-registration of high resolution 3T magnetic resonance imaging with standing 0.5T magnetic resonance imaging to investigate weight bearing joints" In World Congress on Osteoarthritis (Poster)

Dineen, R., Pszczolkowski, S., Flaherty, K., Law, Z., Gallagher, R., Swienton, D., Morgan, P., Roberts, I., Werring, D., Al-Shahi Salman, R., England, T., Bath, P., and Sprigg, N., 2018, February. "Does tranexamic acid lead to increased DWI hyperintense lesion prevalence in patients with spontaneous intracerebral haemorrhage? Results of the TICH-2 MRI sub-study" In European Stroke Organization Conference (Oral)

Pszczolkowski, S., Bath, P.M., Sprigg, N. and Dineen, R.A., 2018, February. "Recruitment challenges in MRI studies of acute intracerebral haemorrhage: experience from the TICH-2 MRI sub-study" In European Stroke Organization Conference (Poster)

Pszczolkowski, S., Gallagher, R.G., Law, Z.K., Meng, D., Swienton, D.J., Morgan, P.S., Bath, P.M., Sprigg, N. and Dineen, R.A., 2017, April. "Automatic quantification of haematoma and surrounding oedema in MRI of acute spontaneous intracerebral haemorrhage: Preliminary results for the TICH-2 MRI sub-study" In Proceedings of ISMRM 4725 (E-poster)

Dineen, R.A., Pszczolkowski, S., Raschke, F., McGlashan, H., Prasad, M., Chow, G., Whitehouse, W. and Auer, D.P., 2017, April. "Divergent trajectory of age-related cerebellar volume change in children with ataxia telangiectasia" In Proceedings of ISMRM 5077 (E-poster)

Pszczolkowski, S., 2014. "Fast and robust methods for non-rigid registration of medical images" (Doctoral dissertation, Imperial College London, UK) [Link]

Mohammadi-Nejad, A., Pszczolkowski, S., Auer, D.P., Sotiropoulos, S., 2020. "Multi-modal neuroimaging pipelines for data preprocessing." (BRC_Pipeline, University of Nottingham, UK) [Link]